Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015818049.1_cds_XP_016499432.1_13357
CDS Infomation

[gene=LOC107818035] [db_xref=GeneID:107818035] [protein=E3 ubiquitin-protein ligase ORTHRUS 2-like] [protein_id=XP_016499432.1] [location=complement(join(56718..57035,57229..57443,57609..57750,57989..58091,58184..58245,58335..58434,58991..59116,59528..60060,61066..61521))] [gbkey=CDS]
Sequence

ATGGCGCACGATAGCGACCTCCCATGCGACGGCGATGGCGTCTGTATGGTGTGCAAAACG
AAGCCATCGGAGAATGAATCCCTCCTCTGCAAGACTTGTGCTACTCCCTGGCACGTCACC
TGCCTCTCTGCTCCTCCCAATTCCATGGCCGACGCCGTCAACTGGGAGTGTCCTGATTGC
TCCGTGCCTCCCGATGCCCCCCCGGTCGCCGTTAAACAGAATGCCGCTGCGGCTTCCTCG
TCATATGGCAGTGATTTGATCGCCGCCATTCGGGCCATAGAATCCGACTCGTCGCTCACC
GAACAAGAGAAGGCCAAGCAACGACAAGAGCTCTTGAGCGGAAGCGCTAAAGCCAGTAAT
CTAGAGGGTGTCAATACAGACAACGATGTTCTCAACATTCTCGATGGAAGTTTGAACTGC
TCTATGTGCATGCAACTGCCGGAGAGACCTGTCACGACACCTTGTGGTCATAACTTTTGC
TTGAAGTGTTTCCAAAAGTGGATTGGGCAGCGGAAGAGCACATGTGCTAATTGTCGCACT
CCTATTCCGGCGAAAATGGCAAGCCAGCCTCGAATTAACTCTGCTCTGGTCATTGCCATA
AGAATGGCAAGAACACTACGATCTGGTGCTTCTGGGGGGACTTCAAAAGTTGCCCATTTC
ATTCACAACCAAAATAGACCTGACAAAGCTTTCATCACTGATCGTGCAAAAAAGTCTGGG
AAGGCTAATGCTTGCAGTGGGAAGATTTTTGTCACAATCCCTGGTGACCATTTTGGACCA
ATTTCAGCAGAGAATGATCCAGAGCGCAACTTGGGCGTCTTAGTTGGTGAGACTTGGGAG
GATCGTTTTGAGTGTCGGCAATGGGGGGCTCATTTCCCTCATGTGGCTGGAATTGCTGGA
CAGTCACATTACGGGGCCCAGTCTGTTGCACTTTCTGGCGGATACGAAGATGATGAGGAC
CATGGTGAATGGTTTCTTTATACTGGAAGTGGTGGAAGAGACTTGAGTGGTAACAAGCGA
ACAAACAAGTTACAATCATTTGACCAGAAATTTGATAAGCTTAATGAAGCTTTACGTGTC
AGCTGTGTCAAGGGTTATCCTGTCCGAGTTGTGAGGTCCCATAAGGAGAAGCGTTCTTCT
TATGCACCAGAGAAGGGAGTACGATACGACGGGGTTTACAGGATTGAAAAATGCTGGCGG
AAAGCTGGAAAACAAGGATTCAAAGTGTGTCGATATCTTTTTGTGCGCTGTGATAATGAA
CCTGCCCCATGGACCTGTGATGAGCATGGGGACCGTCCTAGGGCCTTGCCTTCCATAAAA
GAACTAAATGGTGCTACAGATATAACTGAAAGAAAAGGATCTCCGGCTTGGGATTATGAT
GAGGAGAAGAGTTGTTGGATGTGGAAAAAAGCTCCTCCTACTAGTCGAAAACCTATTCAA
TGTCAAAATGATGATGGAACAAAAGAGAGGAAAGTTAGACCAAGGAAAAATACAGTGTCT
GTGAAGCAAAGGCTTTTGAAAGAGTTTAGCTGTCTTATTTGCCGGGAAGTGATGAATCTC
CCACTTACCACTCCATGTGCACATAACTTCTGCAAGGCATGTTTGGAAAGTGCCTTTGCA
GGACAGTCTTTCACAAGACAGAGGGGTGAAGGCAGACGGACATTACGAGTGCAGAAGAAT
ATAATGAAATGCCCGTCATGCCCAACTGATATATCTGATTTCCTCCAGAATCCCCAGATT
AATAGAGAGTTGATGAATGTAATAGAATCATTGCAGCGCCAAATTGAGGAAGAAAATGCA
GGATTAAATGAAGATGTTGATGGTGGCTCAGATGGAAAAGATGAGGTTCCAACTGAAGAA
GCTGCTGAAACTGATAAACGTGTTGAGGATGATAAAGAAGGTGCGAAGCCTGTCACTAAT
ACTGAAACCAAGCAGACAAACAAGAGGAAGAGGTCCAGTGATAGTAACAATGTATCACCT
AAAAAATCCCTTGACAAACCTGATGTGCATAATCTTGGGGAAGTTGATTCTGCGATACCT
GAACTTTCAGTTTAG

Peptide Sequence

PEP ID

XP_016499432.1
PEP Infomation

PREDICTED: E3 ubiquitin-protein ligase ORTHRUS 2-like [Nicotiana tabacum]
Sequence

MAHDSDLPCDGDGVCMVCKTKPSENESLLCKTCATPWHVTCLSAPPNSMADAVNWECPDC
SVPPDAPPVAVKQNAAAASSSYGSDLIAAIRAIESDSSLTEQEKAKQRQELLSGSAKASN
LEGVNTDNDVLNILDGSLNCSMCMQLPERPVTTPCGHNFCLKCFQKWIGQRKSTCANCRT
PIPAKMASQPRINSALVIAIRMARTLRSGASGGTSKVAHFIHNQNRPDKAFITDRAKKSG
KANACSGKIFVTIPGDHFGPISAENDPERNLGVLVGETWEDRFECRQWGAHFPHVAGIAG
QSHYGAQSVALSGGYEDDEDHGEWFLYTGSGGRDLSGNKRTNKLQSFDQKFDKLNEALRV
SCVKGYPVRVVRSHKEKRSSYAPEKGVRYDGVYRIEKCWRKAGKQGFKVCRYLFVRCDNE
PAPWTCDEHGDRPRALPSIKELNGATDITERKGSPAWDYDEEKSCWMWKKAPPTSRKPIQ
CQNDDGTKERKVRPRKNTVSVKQRLLKEFSCLICREVMNLPLTTPCAHNFCKACLESAFA
GQSFTRQRGEGRRTLRVQKNIMKCPSCPTDISDFLQNPQINRELMNVIESLQRQIEEENA
GLNEDVDGGSDGKDEVPTEEAAETDKRVEDDKEGAKPVTNTETKQTNKRKRSSDSNNVSP
KKSLDKPDVHNLGEVDSAIPELSV

Transcript Sequence

Gene sequence data has not been registered.